Introduction
Binding site discovery:
-Computational -Experimental
Cis-regulatory evolution
Organisms
-Yeast
-Fly
-Mouse
-Human
Binding site degeneracy
Functional variants
Cis-regulatory code
Regulatory networks
Primary literature Nature Biotechnology 21, 1337 - 1342 (2003) Computational
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genetic networks in yeast. Zhaolei Zhang &
Mark Gerstein PNAS | February
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Nicola J. Rinaldi, François Robert,* Duncan T. Odom Science 10 February 2006:Vol. 311. no. 5762, pp. 796 - 800 Gene
Regulatory Networks and the Evolution of Animal Body Plans Eric H.
Davidson1 and Douglas H. Erwin The Plant Cell 16:2923-2939 (2004) A Gene
Regulatory Network Model for Cell-Fate Determination during Arabidopsis
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Expression Profiles Carlos Espinosa-Sotoa, Pablo
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gene regulatory networks: strategies, challenges and perspectivesGong-Hong Wei, De-Pei Liu,and Chih-Chuan Liang Databases
and datasets BNArray
is a systemized tool developed in R. It facilitates the construction of gene
regulatory networks from DNA microarray data by using Bayesian network... Software
and tools AGRIS -The Arabidopsis Gene
Regulatory Information Server (AGRIS) is a new information resource of
Arabidopsis promoter sequences, transcription factors and their target genes.
Nature. 2004 Sep 16;431(7006):308-12. Genomic
analysis of regulatory network dynamics reveals large topological changes.Luscombe NM, Babu MM, Yu H, Snyder M, Teichmann
SA, Gerstein M. .