2008 Fall publications in Department of Ecology and Evolution
Updated 02.02.2009 (Sorted by first author's last name)
Author:
Aguirre, W. E., K. E. Ellis, M. Kusenda, and M. A. Bell. 2008.
Title:
Phenotypic variation and sexual dimorphism in anadromous threespine stickleback: implications for postglacial adaptive radiation.
Journal:
Biological Journal of the Linnean Society. 95:465-478.
Abstract: <= click to show/hide
[no abstract]
Author:
Amaral, Ana R., M. Manuela Coelho, Jesús Marugán-Lobón and F. James Rohlf. 2008.
Title:
Geometric morphometric analysis of cranial shape in closely related delphinid cetacean species: an evolutionary approach: Evolutionary morphology the skull in delphinids on the basis of geometric morphometric procedures.
Journal:
Zoology, 112:38-47.
Abstract: <= click to show/hide
The present study investigates the pattern of
differentiation of cranial shape in three closely related delphinid
cetacean species of the complex Delphinus-Stenella-Tursiops: Delphinus
delphis, Stenella coeruleoalba and Tursiops truncatus. Dorsal and
ventral aspects of the cranium were analysed using landmark-based
geometric morphometric methods. While there was no evidence of sexual
dimorphism for shape or size, multivariate statistical analyses showed
that there were interspecific differences in skull morphology. Skull
shape differences between the three studied species were related with
cranial width and differences in the length of the rostrum relative to
the cranial portion of the skull. D. delphis and S. coeruleoalba
showed high cranial shape similarity, which is indicative of their
evolutionary proximity when compared with T. truncatus. Phenetic
clusters based on cranial shape similarities were found to be
concordant with the molecular phylogenetic clades obtained from
mitochondrial DNA genes. Geometric morphometric methods
can thus be an exceptionally useful tool for the study of
differentiation of delphinid cetacean species and therefore
provide some insights into their evolutionary history.
Author:
Arif, S., W. E. Aguirre, and M. A. Bell.
Title:
Evolutionary diversification of operculum shape in Cook Inlet threespine stickleback.
Journal:
Biol. J. Linn. Soc. In press.
Abstract: <= click to show/hide
[no abstract]
Author:
Bell, M. A., J. D. Stewart and P. J. Park.
Title:
The world’s oldest fossil threespine stickleback.
Journal:
Copeia. In press.
Abstract: <= click to show/hide
[no abstract]
Author:
Bossdorf, O., C. Richards and M. Pigliucci. 2008.
Title:
Epigenetics for ecologists.
Journal:
Ecology Letters 11: 106-115.
Abstract: <= click to show/hide
There is now mounting evidence that heritable variation in ecologically relevant traits can be generated through a suite
of epigenetic mechanisms, even in the absence of genetic variation. Moreover, recent studies indicate that epigenetic
variation in natural populations can be independent from genetic variation, and that in some cases environmentally induced
epigenetic changes may be inherited by future generations. These novel findings are potentially highly relevant to ecologists
because they could significantly improve our understanding of the mechanisms underlying natural phenotypic variation and the
responses of organisms to environmental change. To understand the full significance of epigenetic processes, however, it is
imperative to study them in an ecological context. Ecologists should therefore start using a combination of experimental
approaches borrowed from ecological genetics, novel techniques to analyse and manipulate epigenetic variation, and genomic
tools, to investigate the extent and structure of epigenetic variation within and among natural populations, as well as the
interrelations between epigenetic variation, phenotypic variation and ecological interactions.
Author:
Bossdorf, O. and M. Pigliucci.
Title:
Plasticity to wind is modular and genetically variable in Arabidopsis thaliana.
Journal:
Evolutionary Ecology. In press.
Abstract: <= click to show/hide
Thigmomorphogenesis, the characteristic phenotypic changes by which plants react to
mechanical stress, is a widespread and probably adaptive type of phenotypic plasticity.
However, little is known about its genetic basis and population variation. Here, we examine
genetic variation for thigmomorphogenesis within and among natural populations of the
model system Arabidopsis thaliana. Offspring from 17 field-collected European populations
was subjected to three levels of mechanical stress exerted by wind. Overall, plants were
remarkably tolerant to mechanical stress. Even high wind speed did not significantly alter the
correlation structure among phenotypic traits. However, wind significantly affected plant
growth and phenology, and there was genetic variation for some aspects of plasticity to wind
among A. thaliana populations. Our most interesting finding was that phenotypic traits were
organized into three distinct and to a large degree statistically independent covariance
modules associated with plant size, phenology, and growth form, respectively. These
phenotypic modules differed in their responsiveness to wind, in the degree of genetic
variability for plasticity, and in the extent to which plasticity affected fitness. It is likely,
therefore, that thigmomorphogenesis in this species evolves quasi-independently in different
phenotypic modules.
Author:
M.E. Bradley, J.S. Rest, W.H. Li, and N.B. Schwartz.
Title:
Sulfate Activation Enzymes: Phylogeny and Association with Pyrophosphatase.
Journal:
J. Mol. Evol. (2008).
Abstract: <= click to show/hide
The enzymes catalyzing the first two reactions in the sulfate
activation pathway, ATP-sulfurylase (S) and APS-kinase (K), are fused
as 'KS' in animals but are fused as 'SK' in select bacteria and fungi.
We have discovered a novel triple fusion protein of K, S, and
pyrophosphatase (P) in several protozoan genomes within the
Stramenopile lineage. These triple domain fusion proteins led us to
hypothesize that pyrophosphatase enzymes and sulfate activation
enzymes physically interact to impact the thermodynamics of the
sulfate activation pathway. In support of this hypothesis, we
demonstrate through biochemical assays that separately encoded KS and
P proteins physically interact and that KS/P complexes activate more
sulfate than KS alone. We also conclude on the basis of phylogenetic
analyses that all known KS fusions originate from a single fusion
event early in the eukaryotic lineage. Strikingly, our analyses
support the same conclusion for all known SK fusions. These
observations indicate that the patchwork of fused and nonfused S and K
genes observed in modern-day eukaryotes and prokaryotes are the result
of the two ancestral fusion genes evolving by an assortment of gene
fissions, duplications, deletions, and horizontal transfers in
different lineages. Our integrative use of genomics, phylogenetics,
and biochemistry to characterize pyrophosphatase as a new member of
the sulfate activation pathway should be effective at identifying new
protein members and connections in other molecular pathways.
Author:
Dávalos, L.M., A. C. Bejarano, and H. L. Correa. 2008.
Title:
Disabusing cocaine: Pervasive myths and enduring realities of a globalised commodity.
Journal:
International Journal of Drug Policy.
Abstract: <= click to show/hide
For more than 30 years Colombia has waged an internal War on Drugs
with the support of the international community. During this time, the
illegal economy has evolved toward integrating cultivation with
processing and trafficking, making Colombia the largest grower of coca
in the world. The environmental impact of coca production and
processing is vast, accounting for large quantities of toxic chemicals
directly dumped onto the soil and watersheds, as well as most
deforestation since the 1990s. The policies pursued to stem the coca
economy, however, are based on unfounded assumptions about the
behaviour of coca growers in the context of international markets.
Despite their unfounded premises, these assumptions have acquired a
mythical stature. In this article we review the most persistent myths
about coca production with a view to understanding its links to
environmental degradation. To this end, we present data on the
economic and demographic background of coca growers, their impact on
the environment, and their behaviour in the larger context of
international markets and current eradication policies.
URL
Author:
Dávalos, L.M., and A. Corthals. 2008.
Title:
A new species of Lonchophylla (Chiroptera: Phyllostomidae) from the eastern Andes of northwestern South America.
Journal:
American Museum Novitates 3635, 1-16.
Abstract: <= click to show/hide
Since 2004 five new species have been described in the nectar-feeding
phyllostomid bat genus Lonchophylla. All the new species are endemic
to one Neotropical ecoregion, suggesting that more species remain to
be discovered among collected specimens currently referred to several
widespread taxa. Herein we describe a new species, Lonchophylla
orienticollina, endemic to the middle elevations of the eastern Andes
of Venezuela, Colombia, and Ecuador. The new species superficially
resembles its sympatric congener L. robusta, but its cranial
morphology and combination of measurements are distinctive. Throughout
its range, L. orienticollina is sympatric with L. robusta, and it also
overlaps with L. handleyi in the Cordillera Oriental of Ecuador. The
evolutionary processes leading to the divergence among Lonchophylla
species, as well as the ecological mechanisms that enable multiple,
subtly different species to coexist will remain obscure without new
field and phylogenetic studies.
URL
Author:
Dykhuizen, D. E., D. Brisson, S. Sandigursky, G. P. Wormser, J. Nowakowski, R. B. Nadelman, and I. Schwartz. 2008.
Title:
The propensity of different Borrelia burgdorferi sensu stricto genotypes to cause disseminated infections in humans.
Journal:
Am. J. Tropical Med Hygiene 78:806-810.
Abstract: <= click to show/hide
[no abstract]
PDF
Author:
J. Gurevitch, T.G. Howard, I.W. Ashton, E.A. Leger, K.M. Howe, E. Woo and M. Lerdau. 2008.
Title:
Effects of experimental manipulation of light and nutrients on establishment of seedlings of native and invasive woody species in Long Island, NY forests.
Journal:
Biological Invasions 10: 821-831.
Abstract: <= click to show/hide
While earlier studies on the process of invasion often focused on single factors or on the general explanation
of 'disturbance,' recent work has attempted to move towards a more mechanistic understanding of the factors that
promote plant community invasion. Manipulative experiments provide a means for discerning causal relationships
and interactive effects of environmental factors in promoting invasion; such experiments have been conducted in
a number of grassland and shrub ecosystems. This study extends multifactor manipulative experiments into forest
communities to compare factors influencing early seedling establishment for native and invasive woody plants.
In Long Island, NY, invasion patterns are correlated with forest community type (pine barrens or hardwood),
light availability, and soil N and Ca. We conducted manipulative field experiments in two different years to
determine the relative importance and interaction of experimental gaps and N and Ca addition in pine barrens
and hardwood forests in promoting invasion. We used seedlings of seven common native and invasive species in
the first experiment, and 16 native and invasive species paired phylogenetically in the second experiment.
Light had the strongest effect on plant growth; all plants grew more in gaps. We found no difference in the
average growth rates of native and invasive species. Invasives responded more to high resources than did natives,
with highest relative growth rates in gaps in the more fertile soils of the hardwood forests. Opportunities for
invasion may differ from year to year, with differential success of invaders only in some years and under some
environmental conditions. Clearly, to understand the complex interactions between resources and invasion in
forests will require many manipulative experiments across a range of environments and using suites of invasive
and native species.
Author:
Harcourt-Smith, W. H. E., M. Tallman, S. R. Frost, D. F. Wiley, F. J. Rohlf, E. Delson. 2008.
Title:
Analysis of selected hominoid joint surfaces using laser scanning and geometric morphometrics: a preliminary report.
Journal:
Pp. 373-383 in E. J. Sargis and M. Dagosto (eds.) Mammalian Evolutionary Morphology: A Tribute to Frederick S. Szalay. Springer: Dordrecht.
Abstract: <= click to show/hide
[no abstract]
Author:
Hunt, G., M. A. Bell, and M.P. Travis. 2008.
Title:
Evolution toward a new adaptive optimum: phenotypic evolution in a fossil stickleback lineage.
Journal:
Evolution 62:700-710. (doi:10:1111/j.1558-5646.2007.00310.x)
Abstract: <= click to show/hide
Natural selection has almost certainly shaped many evolutionary trajectories documented in fossil lineages,
but it has proven difficult to demonstrate this claim by analyzing sequences of evolutionary changes.In a
recently published and particularly promising test case, an evolutionary time series of populations displaying
armor reduction in a fossil stickleback lineage could not be consistently distinguished from a null model of
neutral drift, despite excellent temporal resolution and an abundance of indirect evidence implicating natural
selection. Here, we revisit this case study, applying analyses that differ from standard approaches in that:
(1) we do not treat genetic drift as a null model, and instead assess neutral and adaptive explanations on equal
footing using the Akaike Information Criterion; and (2) rather than constant directional selection, the adaptive
scenario we consider is that of a population ascending a peak on the adaptive landscape, modeled as an
Orstein-Uhlenbeck process. For all three skeletal features measured in the stickleback lineage, the adaptive
model decisively outperforms neutral evolution, supporting a role for natural selection in the evolution of these
traits. These results demonstrate that, at least under favorable circumstances, it is possible to infer in fossil
lineages the relationship between evolutionary change and features of the adaptive landscape.
Author:
Jeong, S., Rebeiz. M., Andolfatto, P., Werner, T., True, J.R., and Carroll, S.B. 2008.
Title:
The evolution of gene regulation underlies the morphological divergence of two closely related Drosophila species.
Journal:
Cell 132: 783-703.
Abstract: <= click to show/hide
Understanding the mechanisms underlying the morphological divergence of species is one of the central goals of
evolutionary biology. Here, we analyze the genetic and molecular bases of the divergence of body pigmentation
patterns between Drosophila yakuba and its sister species Drosophila santomea. We found that loss of pigmentation
in D. santomea involved the selective loss of expression of the tan and yellow pigmentation genes. We demonstrate
that tan gene expression was eliminated through the mutational inactivation of one specific tan cis-regulatory
element (CRE) whereas the Tan protein sequence remained unchanged. Surprisingly, we identify three independent
loss-of-function alleles of the tan CRE in the young D. santomea lineage. We submit that there is sufficient
empirical evidence to support the general prediction that functional evolutionary changes at pleiotropic loci will
most often involve mutations in their discrete, modular cis-regulatory elements.
Author:
Lachance, J. 2008.
Title:
A Fundamental Relationship Between Genotype Frequencies and Fitnesses
Journal:
Genetics 180:1087-93
Abstract: <= click to show/hide
The set of possible postselection genotype frequencies in an infinite, randomly mating population is found.
Geometric mean heterozygote frequency divided by geometric mean homozygote frequency equals two times the
geometric mean heterozygote fitness divided by geometric mean homozygote fitness. The ratio of genotype
frequencies provides a measure of genetic variation that is independent of allele frequencies. When this
ratio does not equal two, either selection or population structure is present. Within-population HapMap
data show population-specific patterns, while pooled data show an excess of homozygotes.
Author:
Levinton, J.S. 2008.
Title:
The Cambrian Explosion: How Do We Use the Evidence?
Journal:
BioScience 58: 855-864
Abstract: <= click to show/hide
The Cambrian explosion is an excellent example of a grand idea that has been tempered by the steady collection
of data to test hypotheses. Historically, the idea of an “explosion” developed from an apparent lack of bilaterian
animal fossils before a certain point in the fossil record, in contrast with a great diversity of life that seemed
to appear in the Cambrian period. DNA molecular clock estimates contradict this story, however,
with most dates for the divergence of major phyla predating the Cambrian by 100 million to 400 million years.
The contradiction might be rectified by corrections to the clock or by discoveries of Precambrian bilaterian fossils.
Although many candidates exist, no single environmental or biological explanation for the Cambrian explosion
satisfactorily explains the apparent sudden appearance of much of the diversity of bilaterian animal life.
Scientists’ understanding of this phenomenon has been greatly amplified in recent years by better geological dating
and environmental characterization, new fossil discoveries, and by a great expansion of our knowledge of developmental
mechanisms and their evolutionary meaning.
Author:
Levinton, J.S., Pochron, S.T. 2008.
Title:
Temporal and geographic trends in mercury concentrations in muscle tissue in five species of Hudson Rive, USA, fish.
Journal:
Envrionmental Toxicology and Chemistry. 27: 1691-97.
Abstract: <= click to show/hide
We analyzed a New York (USA) state database of mercury concentrations in muscle tissue for five species of fish
(striped bass, yellow perch, largemouth bass, smallmouth bass, and carp) over a range of locations in the Hudson
River (USA) between 1970 and 2004. We used regression models to discern temporal andgeographic change in the fish
while controlling for a positive correlation between mercury concentration and body mass. Mercury concentrations
significantly increased in fish from New York Harbor waters to the mid–Hudson River. Striped bass and yellow perch
showed a shallower increase in mercury concentration with river mile than did carp, largemouth bass, and smallmouth
bass. Mercury concentrations declined over the 34-year period. These results imply that a geographically restricted
source of mercur y may be spread throughout the watershed by toxin-laden dispersing species. The increase of mercury
toward the north may relate to a point source in the mid–Hudson River, or it may indicate mercury released from the
Adirondack watershed. The decline of mercury over three decades corresponds to a reduction of various inputs in the
region. The temporal and geographic pattern of mercury in sediments corresponds to the geographic trend of mercury in fish.
Author:
Moen, D. S., and J. J. Wiens. 2009.
Title:
Phylogenetic evidence for competitively-driven divergence: body-size evolution in Caribbean treefrogs (Hylidae: Osteopilus).
Journal:
Evolution 63:195-214.
Abstract: <= click to show/hide
[no abstract]
Author:
Nomakuchi, S., P. J. Park, and M. A. Bell.
Title:
Correlation between exploration activity and use of social information in threespine sticklebacks.
Journal:
Behavioral Ecology. In press.
Abstract: <= click to show/hide
[no abstract]
Author:
Pahuta, M. A., J. G. Mainprize, F. J. Rohlf, and O. M. Antonyshyn 2009.
Title:
Biometric Morphing: a novel technique for the analysis of morphological outcomes after facial surgery.
Journal:
Annals of Plastic Surgery. 62:42-47.
Abstract: <= click to show/hide
The results of facial surgery are intuitively judged in
terms of the visible changes in facial features or proportions.
However, describing these morphologic outcomes objectively remains a
challenge. Biometric morphing addresses this issue by merging
statistical shape analysis and image processing. This study describes
the implementation of biometric morphing in describing the average
morphologic result of facial surgery. The biometric morphing protocol
was applied to pre- and postoperative images of the following: (1) 40
dorsal hump reduction rhinoplasties and (2) 20 unilateral enophthalmos
repairs. Pre- and postoperative average images (average morphs) were
generated. The average morphs provided an objective rendering of nasal
and periorbital morphology, which summarized the average features and
extent of deformity in a population of patients. Subtle alterations in
morphology after surgery, which would otherwise be difficult to
identify or demonstrate, were clearly illustrated. Biometric morphing
is an effective instrument for describing average facial morphology in
a population of patients.
Author:
Pigliucci, M. 2008.
Title:
The borderlands between science and philosophy: an introduction.
Journal:
Quarterly Review of Biology 83(1): 7-15.
Abstract: <= click to show/hide
Science and philosophy have a very long history, dating back at least to the 16th and 17th
centuries, when the first scientist-philosophers, such as Bacon, Galilei, and Newton, were beginning the process of
turning natural philosophy into science. Contemporary relationships between the two fields are still to some extent
marked by the distrust that maintains the divide between the so-called "two cultures". An increasing number of
philosophers, however, are making conceptual contributions to sciences ranging from quantum mechanics to evolutionary
biology, and a few scientists are conducting research relevant to classically philosophical fields of inquiry, such
as consciousness and moral decision-making. This article will introduce readers to the borderlands between science
and philosophy, beginning with a brief description of what philosophy of science is about, and including a discussion
of how the two disciplines can fruitfully interact not only at the level of scholarship, but also when it comes to
controversies surrounding public understanding of science.
Author:
Pigliucci, M. 2008.
Title:
Is evolvability evolvable?
Journal:
Nature Reviews Genetics 9: 75-82.
Abstract: <= click to show/hide
In recent years, biologists have increasingly been asking whether the ability to evolve - the evolvability -
of biological systems, itself evolves, and whether this phenomenon is the result of natural selection or a
by-product of other evolutionary processes. The concept of evolvability, and the increasing theoretical and
empirical literature that refers to it, may constitute one of several pillars on which an extended evolutionary
synthesis will take shape during the next few years, although much work remains to be done on how evolvability
comes about.
Author:
Pigliucci, M.
Title:
Okasha's Evolution and the Levels of Selection: toward a broader conception of evolutionary biology.
Journal:
Biology & Philosophy. In press.
Abstract: <= click to show/hide
The debate about the levels of selection has been one of the most controversial
both in evolutionary biology and in philosophy of science. Okasha’s book makes the sort of
contribution that simply will not be able to be ignored by anyone interested in this field for
many years to come. However, my interest here is in highlighting some examples of how
Okasha goes about discussing his material to suggest that his book is part of an increas-
ingly interesting trend that sees scientists and philosophers coming together to build a
broadened concept of "theory" through a combination of standard mathematical treat-
ments and conceptual analyses. Given the often contentious history of the relationship
between philosophy and science, such trend cannot but be welcome.
Author:
Pigliucci, M.
Title:
Sewall Wright's adaptive landscapes: 1932 vs. 1988.
Journal:
Biology & Philosophy. In press.
Abstract: <= click to show/hide
Sewall Wright introduced the metaphor of evolution on "adaptive landscapes" in a pair of papers published
in 1931 and 1932. The metaphor has been one of the most influential in modern evolutionary biology, although
recent theoretical advancements show that it is deeply flawed and may have actually created
research questions that are not, in fact, fecund. In this paper I examine in detail what
Wright actually said in the 1932 paper, as well as what he thought of the matter at
the very end of his career, in 1988. While the metaphor is flawed, some of the
problems which Wright was attempting to address are still with us today, and are in
the process of being reformulated as part of a forthcoming Extended Evolutionary Synthesis.
Author:
Pigliucci, M.
Title:
What, if anything, is an evolutionary novelty?
Journal:
Philosophy of Science. In press.
Abstract: <= click to show/hide
The idea of phenotypic novelty appears throughout the evolutionary literature, usually
in the context of some attack (or defense) of the modern synthesis of the 1940s.
Novelties have been defined so broadly as to make the term meaningless, as well as
so narrowly as to apply only to a limited number of spectacular structures, such as
wings and eyes. In this essay I briefly examine some of the available definitions of
phenotypic novelty and construct an argument leading to the conclusion that the
modern synthesis is ill equipped at explaining novelties. I then discuss three frameworks
that may help biologists get a better insight of how novelties arise during evolution
but warn that these frameworks should be considered in addition to, and not as
potential substitutes of, the modern synthesis.
Author:
Richards, C., R. L. Walls, J. P. Bailey, R. Parameswaran, T. George and M. Pigliucci. 2008.
Title:
Plasticity in salt tolerance traits allows for invasion of novel habitat by Japanese Knotweed s.l.
(Fallopia japonica and F. x bohemica, Polygonaceae).
Journal:
American Journal of Botany 95(8): 931-942.
Abstract: <= click to show/hide
Japanese knotweeds are among the most invasive organisms in the world. Their recent expansion into salt marsh
habitat provides a unique opportunity to investigate how invasives establish in new environments. We used
morphology, cytology, and AFLP genotyping to identify taxa and clonal diversity in roadside and salt marsh
populations. We conducted a greenhouse study to determine the ability to tolerate salt and whether salt marsh
populations are more salt tolerant than roadside populations as measured by the efficiency of PSII, leaf area,
succulence, height, root-to-shoot ratio, and total biomass. Clonal diversity was extremely low with one F. japonica
clone and five F. bohemica genotypes. The two taxa were significantly different in several traits, but did not vary
in biomass or plasticity of any trait. All traits were highly plastic in response to salinity, but differed
significantly among genets. Despite this variation, plants from the salt marsh habitats did not perform better
in the salt treatment, suggesting that they are not better adapted to tolerate salt. Instead, our data support
the hypothesis that plasticity in salt tolerance traits may allow these taxa to live in saline habitats without
specific adaptation to tolerate salt.
Author:
Stoebel, D. M., A. M.Dean, D.E. Dykhuizen. 2008.
Title:
The cost of expression of Escherichia coli lac operon proteins is in the process, not the products.
Journal:
Genetics 178:1653-1660.
Abstract: <= click to show/hide
[no abstract]
PDF
Author:
True, J.R. 2008.
Title:
Combing evolution.
Journal:
Evol Dev. 10:400-402.
Abstract: <= click to show/hide
[no abstract]
Author:
Valentin, A. E., X. Penin, J.-P. Chanut, J.-M. Sévigny, and F. J. Rohlf. 2008.
Title:
Arching effect on fish body shape in geometric morphometric studies.
Journal:
J. of Fish Biology, 73:623-638.
Abstract: <= click to show/hide
Upward and downward arching of the body was observed during
a study on redfishes Sebastes sp. population structure in the
north-west Atlantic Ocean. The present study investigated the
potential causes of this arching artefact. The results suggested that
it is not related to biological factors (size or species) or to the
preservation technique (freezing), but is rather due to slight
posture differences between fishes during landmark capture. The
consequences of the arching artefact on data analysis are discussed.
An approach coupling a PCA-based model of the arching with Burnaby's
orthogonal projection is proposed for removing the artefact from the data.
Author:
Yukilevich, R. and J.R. True. 2008.
Title:
African morphology, behavior and phermones underline incipient sexual isolation between US and Caribbean Drosophila melanogaster.
Journal:
Evolution 62: 2807-2828.
Abstract: <= click to show/hide
Understanding incipient sexual isolation and speciation is an important pursuit in evolutionary biology. The fruit
fly Drosophila melanogaster is a useful model to address questions about the early stages of sexual isolation
occurring within widespread species. This species exhibits sexual isolation between cosmopolitan and African flies,
especially from Zimbabwe populations. In addition, we have recently described another example of partial sexual
isolation between some US and Caribbean populations. This and other phenotypic data suggests that Caribbean flies
might be segregating African traits. In the present work we study the geographical variation at the pheromone locus
desaturase-2, as well as morphology and courtship behavior across the US-Caribbean region. We find that US and
Caribbean populations show sharp geographical clines in all traits and demonstrate that Caribbean traits are more
similar to those of Africa than to US populations. Further, African traits in the Caribbean are associated with
sexual isolation and best explain variation in sexual isolation when all traits are considered together. These
results imply that Caribbean mating preferences are likely to be based on African traits and that even at such
early stages of sexual isolation, individuals may already cue in on several traits simultaneously during mate choice.
Author:
Yukilevich, R., Lachance, J., Aoki, F., True, J. R. 2008
Title:
Long-term evolution of epistatic genetic networks.
Journal:
Evolution 62:2215-2235.
Abstract: <= click to show/hide
Gene networks are likely to govern most traits in nature. Mutations at these genes often show functional epistatic
interactions that lead to complex genetic architectures and variable fitness effects in different genetic backgrounds.
Understanding how epistatic genetic systems evolve in nature remains one of the great challenges in evolutionary
biology. Here we combine an analytical framework with individual-based simulations to generate novel predictions
about long-term adaptation of epistatic networks. We find that relative to traits governed by independently evolving
genes, adaptation with epistatic gene networks is often characterized by longer waiting times to selective sweeps,
lower standing genetic variation, and larger fitness effects of adaptive mutations. This may cause epistatic networks
to either adapt more slowly or more quickly relative to a nonepistatic system. Interestingly, epistatic networks may
adapt faster even when epistatic effects of mutations are on average deleterious. Further, we study the evolution of
epistatic properties of adaptive mutations in gene networks. Our results show that adaptive mutations with small
fitness effects typically evolve positive synergistic interactions, whereas adaptive mutations with large fitness
effects evolve positive synergistic and negative antagonistic interactions at approximately equal frequencies. These
results provide testable predictions for adaptation of traits governed by epistatic networks and the evolution of
epistasis within networks.
URL
Author:
Yukilevich R, True J.R. 2008
Title:
Incipient sexual isolation among cosmopolitan Drosophila melanogaster populations.
Journal:
Evolution 62:2112-21.
Abstract: <= click to show/hide
Understanding the biological conditions and the genetic basis of early stages of sexual isolation and speciation
is an outstanding question in evolutionary biology. It is unclear how much genetic and phenotypic variation for
mating preferences and their phenotypic cues is segregating within widespread and human-commensal species in nature.
A recent case of incipient sexual isolation between Zimbabwe and cosmopolitan populations of the human-commensal
fruit fly Drosophila melanogaster indicates that such species may initiate the process of sexual isolation. However,
it is still unknown whether other geographical populations have undergone evolution of mating preferences. In this
study we present new data on multiple-choice mating tests revealing partial sexual isolation between the United
States and Caribbean populations. We relate our findings to African populations, showing that Caribbean flies are
partially sexually isolated from Zimbabwe flies, but mate randomly with West African flies, which also show partial
sexual isolation from the United States and Zimbabwe flies. Thus, Caribbean and West African populations seem to
exhibit distinct mating preferences relative to populations in the United States and in Zimbabwe. These results
suggest that widespread and human-commensal species may harbor different types of mating preferences across their
geographical ranges.
|